westpa.westext package

Currently Supported

• Adaptive Voronoi Binning
  • Submodules
  • westpa.westext.adaptvoronoi.adaptVor_driver module
    • check_bool()
    • ConfigItemMissing
    • VoronoiBinMapper
      • VoronoiBinMapper.assign()
    • AdaptiveVoronoiDriver
      • AdaptiveVoronoiDriver.dfunc()
      • AdaptiveVoronoiDriver.get_dfunc_method()
      • AdaptiveVoronoiDriver.get_mapper_func()
      • AdaptiveVoronoiDriver.get_initial_centers()
      • AdaptiveVoronoiDriver.update_bin_mapper()
      • AdaptiveVoronoiDriver.update_centers()
      • AdaptiveVoronoiDriver.prepare_new_iteration()
  • Module contents
    • AdaptiveVoronoiDriver
      • AdaptiveVoronoiDriver.dfunc()
      • AdaptiveVoronoiDriver.get_dfunc_method()
      • AdaptiveVoronoiDriver.get_mapper_func()
      • AdaptiveVoronoiDriver.get_initial_centers()
      • AdaptiveVoronoiDriver.update_bin_mapper()
      • AdaptiveVoronoiDriver.update_centers()
      • AdaptiveVoronoiDriver.prepare_new_iteration()
• String Method
  • Submodules
  • westpa.westext.stringmethod.fourier_fitting module
  • westpa.westext.stringmethod.string_driver module
  • westpa.westext.stringmethod.string_method module
  • Module contents
• haMSM analysis/Restarting
  • Description
  • Usage
    • Configuration
      • west.cfg
    • Running
  • Extensions
    • restart_initialization.json
    • Featurization overrides
    • Doing only post-analysis
    • Work manager for restarting
    • Continuing a failed run
    • Potential Pitfalls/Troubleshooting
    • References

Depreciated

• WEED
  • Submodules
  • westpa.westext.weed.BinCluster module
    • ClusterList
      • ClusterList.join()
      • ClusterList.join_simple()
  • westpa.westext.weed.ProbAdjustEquil module
    • probAdjustEquil()
  • westpa.westext.weed.UncertMath module
    • UncertContainer
      • UncertContainer.transpose()
      • UncertContainer.recip()
      • UncertContainer.update_mask()
      • UncertContainer.concatenate()
      • UncertContainer.weighted_average()
  • westpa.westext.weed.weed_driver module
    • check_bool()
    • RateAverager
      • RateAverager.extract_data()
      • RateAverager.task_generator()
      • RateAverager.calculate()
    • probAdjustEquil()
    • bins_from_yaml_dict()
    • WEEDDriver
      • WEEDDriver.get_rates()
      • WEEDDriver.prepare_new_iteration()
  • Module contents
    • probAdjustEquil()
    • WEEDDriver
      • WEEDDriver.get_rates()
      • WEEDDriver.prepare_new_iteration()
• WESS
  • Submodules
  • westpa.westext.wess.ProbAdjust module
    • solve_steady_state()
    • prob_adjust()
  • westpa.westext.wess.wess_driver module
    • check_bool()
    • RateAverager
      • RateAverager.extract_data()
      • RateAverager.task_generator()
      • RateAverager.calculate()
    • prob_adjust()
    • bins_from_yaml_dict()
    • reduce_array()
    • WESSDriver
      • WESSDriver.get_rates()
      • WESSDriver.prepare_new_iteration()
  • Module contents
    • prob_adjust()
    • WESSDriver
      • WESSDriver.get_rates()
      • WESSDriver.prepare_new_iteration()

Module contents